Today we chat to Joe Oddy about his life as a Plant Sciences PhD Student at Rothamsted Research.
Give us a summary of your research, Joe!
I study how levels of the amino acid asparagine in wheat are controlled by genetics and the environment. Asparagine levels in wheat grain determine the levels of acrylamide, a probable carcinogen, in certain foods. We are hoping to better understand the biology of asparagine to mitigate this risk.
What does a day in the life of a Plant Sciences PhD Student look like?
My schedule is quite variable depending on what analysis I am doing. I could have whole days in the lab doing molecular work or whole days at the computer analysing and writing up data. Most of the time it is probably somewhere in between!
I think I had a good grounding in basic principles from my undergraduate degree, but the training they gave in R stands out as being particularly useful. In my degree program I also worked for a year in research, which really helped prepare me for this kind of project work.
What are some of the highlights so far?
Being able to go outside to check plants in the field or in the glasshouse makes a nice break if you have been doing computer work all day! Finishing up some analysis after a lot of data collection is also quite cathartic, as long as it works…
What is one of the biggest challenges faced in a PhD?
In my project so far, the biggest challenge has just been trying to decide what research questions to focus on since there are so many interesting options available. I realise I am probably quite fortunate to have this be my biggest challenge!
What advice would you give to someone considering a PhD?
My undergraduate university actually gave me this advice. They said that the most important part of choosing a project was not the university or the project itself, but the supervisor. I think this is true in a lot of cases, and at least for me.
I wasn’t able to go into the labs for a while but thankfully my plants in the field and glasshouse were maintained. By the time they finished growing the lockdown had been partially eased. At last, a long growing season has helped rather than hindered a PhD project.
What are you hoping to do after your research?
I’d like to go into research either in academia or industry, but beyond that I’m not sure. The landscape is always changing and I would probably be open to anything that seems interesting!
Joe Oddy is a PhD Student at Rothamsted Research and a member of SCI’s Agri-Food Early Career Committee and SCI’s Agriscences Committee.
Fertile soils teem with life of all shapes and sizes, from badgers and moles to insects and the most minute microbes, forming an intricate web of life. Each plays its part – earthworms, for example, burrow through soils opening out channels that improve aeration and water percolation. They are, in Charles Darwin’s words, ‘nature’s ploughs’.
Microbes are quite probably the largest biomass, certainly numerically. The great majority form beneficial relationships with plants, relatively few are pathogens capable of causing crop diseases. Some of the most beneficial are nitrogen-fixing bacteria, which form symbiotic associations with the roots of legumes (clovers, peas and beans).
Their nitrogenase enzymes are capable of combining atmospheric nitrogen with hydrogen-forming ammonia. Followed by conversion into nitrites and nitrates which are made available for the host plant in exchange for carbohydrates, sources of energy for the microbes. The presence of these bacteria is indicated by white nodules on the roots of legumes.
The white nodules on the roots of legumes indicate the presence of nitrogen-fixing bacteria, which provide nourishment to microbes in the soil.
The fungi mycorrhizae also form associations with plant roots. These may form sheaths wrapping round the root, ecto-mycorhizea, or penetrate into the root cortex as endo-mycorrhizea, working in close association with host cells. Mycorrhizae solubilise soil deposits of phosphates and other minerals, making them available for the host. They also provide protection from root-invading plant pathogens.
These fungi utilise carbohydrates supplied by their hosts as energy sources in a similar manner to nitrogen fixing bacteria. Mutualistic mycorrhizal associations are found across most higher plant families with the key exception of the brassicas. This exception quite probably relates to production of the iso-thiocyanate mustard oil, which is fungi-toxic, in brassica roots.
Farmyard manure and compost stimulate soil health by introducing beneficial microbes.
Benefits from nitrogen-fixing bacteria and mycorrhizal fungi were recognised by 19th century agronomists. Much more recently, science has begun uncovering the biological capital of myriad microbes present in healthy soils. Research is being stimulated by recognition of the need for sustainable forms of crop husbandry that utilise ecologically sound techniques in integrated management.
Soil health can be stimulated by incorporation of farmyard manure or well composted green wastes, both containing huge populations of beneficial microbes. The critical importance of building and maintaining healthy soils cannot be over-emphasised. Quite simply, our food supplies depend upon it.Interested in soil health? Why not register for free to attend the 2020 Bright SCIdea Challenge final? One of the teams in this year’s final are pitching their method to restore the fertility of heavy metal ion rich farmland and increase crop yields.